These are the UI and server components of the expression patterns
panel of the shiny app. It is generated by including 'Patterns' in the
panels.default argument of generateShinyApp.
Usage
patternPanelUI(id, metadata, show = TRUE)
patternPanelServer(id, expression.matrix, metadata, anno)Arguments
- id
the input slot that will be used to access the value
- metadata
a data frame containing metadata for the samples contained in the expression.matrix; must contain at minimum two columns: the first column must contain the column names of the expression.matrix, while the last column is assumed to contain the experimental conditions that will be tested for differential expression; a list (of the same length as modality) can be provided if #'
length(modality) > 1- show
whether to show the panel or not; default is TRUE; there for compatibility with specifying panels to show
- expression.matrix
the expression matrix; rows correspond to genes and columns correspond to samples; usually preprocessed by
preprocessExpressionMatrix; a list (of the same length as modality) can be provided if #'length(modality) > 1- anno
annotation data frame containing a match between the row names of the expression.matrix (usually ENSEMBL IDs) and the gene names that should be rendered within the app and in output files; this object is created by
generateShinyAppusing the org.db specified