This function converts an adjacency matrix to a data frame
of network links, subset to the most important ones.
Usage
get_link_list_rename(weightMat, plotConnections)
Arguments
- weightMat
the (weighted) adjacency matrix - regulators in rows,
targets in columns
- plotConnections
the number of connections to subset to
Value
A data frame with fields from, to and value, describing the edges
of the network
Examples
weightMat <- matrix(
c(0.1, 0.4, 0.8, 0.3), nrow = 2, ncol = 2,
dimnames = list("regulators" = c("r1", "r2"), "targets" = c("t1", "t2"))
)
get_link_list_rename(weightMat, 2)
#> from to value
#> 1 r1 t2 0.8
#> 2 r2 t1 0.4