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Build a Trajectory Helper Object

Source: R/pseudotime.R
get_trajectory_object.Rd

Extracts graph nodes, edges and projected cell-to-node assignments from a Monocle3 object for downstream plotting and analysis.

Usage

get_trajectory_object(monocle_object, reduction_name = "UMAP")

Arguments

monocle_object

A Monocle3 object.

reduction_name

Name of the trajectory reduction to use.

Value

A list with graph, node positions, edge table and closest vertices.